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Sample GSM1337328 Query DataSets for GSM1337328
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_24 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_24 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 71
clinical status: osteoarthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_24
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 436.6 P 0.00418
1053_at 194.9 P 0.001602
117_at 231.7 P 0.001141
121_at 1017.3 P 0.007543
1255_g_at 412.7 P 0.009985
1294_at 521.9 P 0.000388
1316_at 81 A 0.066865
1320_at 74.8 A 0.35869
1405_i_at 232.5 P 0.000762
1431_at 30.8 A 0.089405
1438_at 88.4 A 0.35869
1487_at 557.7 P 0.035163
1494_f_at 184.1 P 0.02786
1598_g_at 2862.6 P 0.000322
160020_at 627 P 0.013092
1729_at 973.5 P 0.00418
177_at 187 P 0.007543
1773_at 100.5 A 0.250724
179_at 616.4 A 0.11716
1861_at 195.2 P 0.003585

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337328_EB_24.CEL.gz 2.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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