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Sample GSM1337329 Query DataSets for GSM1337329
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_54 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_54 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 76
clinical status: osteoarthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_54
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 532.3 P 0.003585
1053_at 166.4 P 0.000959
117_at 409.1 P 0.000266
121_at 924 P 0.001141
1255_g_at 38.8 A 0.218983
1294_at 541.2 P 0.000388
1316_at 65.3 P 0.048995
1320_at 14.7 A 0.64131
1405_i_at 253 P 0.001165
1431_at 42 P 0.024711
1438_at 90.1 A 0.138765
1487_at 362.2 P 0.017001
1494_f_at 149.1 P 0.02786
1598_g_at 6318 P 0.000266
160020_at 742.7 P 0.006532
1729_at 676.6 P 0.001602
177_at 153.4 P 0.000673
1773_at 71.5 A 0.150527
179_at 390.5 A 0.11716
1861_at 235.8 P 0.001354

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337329_EB_54.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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