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Sample GSM1337330 Query DataSets for GSM1337330
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_90 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_90 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 61
clinical status: osteoarthritis
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_90
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 447.1 P 0.00418
1053_at 255.9 P 0.000959
117_at 163.4 P 0.001141
121_at 902.6 P 0.001354
1255_g_at 61.1 M 0.060419
1294_at 698 P 0.000322
1316_at 68.3 A 0.066865
1320_at 53.9 A 0.378184
1405_i_at 754 P 0.001432
1431_at 41.7 A 0.127645
1438_at 77.9 A 0.339558
1487_at 524.3 P 0.021866
1494_f_at 128 A 0.066865
1598_g_at 6053.7 P 0.000266
160020_at 572.5 P 0.009985
1729_at 919 P 0.002617
177_at 186.4 P 0.007543
1773_at 118.2 A 0.150527
179_at 351.2 A 0.189687
1861_at 268.3 P 0.000562

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337330_EB_90.CEL.gz 2.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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