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Sample GSM1337331 Query DataSets for GSM1337331
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_94 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_94 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 75
clinical status: osteoarthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_94
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 498.4 P 0.005643
1053_at 279.4 P 0.00418
117_at 185.9 P 0.02786
121_at 876.2 P 0.00418
1255_g_at 34.5 A 0.204022
1294_at 576.8 P 0.000959
1316_at 103.4 P 0.017001
1320_at 56.2 A 0.438361
1405_i_at 78.1 P 0.005504
1431_at 41.1 A 0.07383
1438_at 29.3 A 0.581931
1487_at 450.7 P 0.035163
1494_f_at 267.3 P 0.019304
1598_g_at 5795.4 P 0.000266
160020_at 434.3 P 0.021866
1729_at 744.7 P 0.000959
177_at 181.3 P 0.001141
1773_at 113.4 A 0.189687
179_at 382.6 A 0.150527
1861_at 310.4 P 0.001892

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337331_EB_94.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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