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Sample GSM1337332 Query DataSets for GSM1337332
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_97 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_97 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: male
age: 78
clinical status: osteoarthritis
Treatment protocol NSARD, prednisolone, MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_97
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 355 P 0.001892
1053_at 245.6 P 0.001354
117_at 261.3 P 0.000388
121_at 829.5 P 0.000959
1255_g_at 93.4 A 0.107301
1294_at 432.2 P 0.000388
1316_at 84.9 P 0.014937
1320_at 37 A 0.397994
1405_i_at 59.1 P 0.036797
1431_at 33.4 A 0.098054
1438_at 49.8 A 0.32083
1487_at 560.7 P 0.011447
1494_f_at 55.1 A 0.107301
1598_g_at 4586.8 P 0.000266
160020_at 635.3 P 0.005643
1729_at 685.7 P 0.001141
177_at 74.4 P 0.017001
1773_at 103.9 A 0.107301
179_at 375.2 A 0.07383
1861_at 210.4 P 0.000673

Total number of rows: 22283

Table truncated, full table size 591 Kbytes.




Supplementary file Size Download File type/resource
GSM1337332_EB_97.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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