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Sample GSM1337333 Query DataSets for GSM1337333
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_99 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_99 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: male
age: 69
clinical status: osteoarthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_99
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 497 P 0.00418
1053_at 389.2 P 0.000562
117_at 237.2 P 0.00418
121_at 1102.1 P 0.002228
1255_g_at 42.4 A 0.250724
1294_at 609.8 P 0.000468
1316_at 75 P 0.021866
1320_at 19.6 A 0.541184
1405_i_at 149 P 0.004591
1431_at 25.1 A 0.138765
1438_at 81.6 A 0.458816
1487_at 475.2 P 0.031336
1494_f_at 207.8 P 0.031336
1598_g_at 4639.6 P 0.000219
160020_at 507.3 P 0.02786
1729_at 994.8 P 0.000562
177_at 187.8 P 0.013092
1773_at 137 A 0.204022
179_at 687.3 M 0.060419
1861_at 363.6 P 0.000673

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337333_EB_99.CEL.gz 2.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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