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Sample GSM1337334 Query DataSets for GSM1337334
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_100 (U133A)
Sample type RNA
Source name synovial membrane patient EB_100 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 71
clinical status: osteoarthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1007_s_at 668.9 P 0.003585
1053_at 287.1 P 0.000959
117_at 217.1 P 0.003067
121_at 1507.3 P 0.003067
1255_g_at 190.3 P 0.043968
1294_at 472.9 P 0.001354
1316_at 117.9 P 0.031336
1320_at 70 A 0.397994
1405_i_at 101.5 M 0.054711
1431_at 60.2 P 0.048995
1438_at 105.4 A 0.302547
1487_at 684 P 0.039365
1494_f_at 247.2 P 0.039365
1598_g_at 4004.8 P 0.000219
160020_at 977.8 P 0.02786
1729_at 561.4 P 0.003067
177_at 136.6 P 0.024711
1773_at 108.5 A 0.35869
179_at 644.7 A 0.127645
1861_at 270.6 P 0.013092

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.

Supplementary file Size Download File type/resource
GSM1337334_EB_100.CEL.gz 2.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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