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Sample GSM1337335 Query DataSets for GSM1337335
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_104 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_104 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 80
clinical status: osteoarthritis
Treatment protocol NSARD
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_104
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 559.7 P 0.00418
1053_at 172 P 0.001892
117_at 230.7 P 0.001354
121_at 898.8 P 0.00418
1255_g_at 135.5 P 0.039365
1294_at 590.3 P 0.000673
1316_at 86.7 P 0.021866
1320_at 54.7 A 0.397994
1405_i_at 265.2 P 0.000762
1431_at 25.9 A 0.150527
1438_at 499.6 P 0.000805
1487_at 439.9 P 0.024711
1494_f_at 139.5 A 0.107301
1598_g_at 6497 P 0.000219
160020_at 1094 P 0.001602
1729_at 622 P 0.004863
177_at 140.3 P 0.004863
1773_at 137.8 A 0.11716
179_at 542.3 A 0.127645
1861_at 275.4 P 0.003067

Total number of rows: 22283

Table truncated, full table size 592 Kbytes.




Supplementary file Size Download File type/resource
GSM1337335_EB_104.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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