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Sample GSM1337336 Query DataSets for GSM1337336
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient EB_140 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_140 (osteoarthrisits)
Organism Homo sapiens
Characteristics gender: female
age: 66
clinical status: osteoarthritis
Treatment protocol NSAID
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_140
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 739 P 0.002228
1053_at 100.8 P 0.013092
117_at 632.3 P 0.000388
121_at 1213 P 0.001602
1255_g_at 371.5 P 0.002228
1294_at 766.4 P 0.000266
1316_at 111.2 P 0.002228
1320_at 68.8 A 0.175989
1405_i_at 126.1 P 0.000944
1431_at 73.8 P 0.00418
1438_at 101.3 A 0.11716
1487_at 351.9 P 0.024711
1494_f_at 136.7 P 0.039365
1598_g_at 4081.4 P 0.000219
160020_at 998.3 P 0.006532
1729_at 710.3 P 0.000805
177_at 141.1 P 0.002228
1773_at 179.9 P 0.024711
179_at 486.2 M 0.060419
1861_at 200.9 P 0.006532

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337336_EB_140.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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