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Sample GSM1338303 Query DataSets for GSM1338303
Status Public on Mar 01, 2015
Title MDA-MB-468_siControl_rep3
Sample type RNA
 
Source name MDA-MB-468 cells treated with siControl
Organism Homo sapiens
Characteristics cell line: MDA-MB-468 breast cancer cell line
treatment: siControl
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Scan setting file: Direct Hyb
Description Sample name: 468c3.a1.lbe1
Data processing The data were normalized using quantile normalization with BASE
 
Submission date Mar 03, 2014
Last update date Mar 01, 2015
Contact name Christer Larsson
E-mail(s) christer.larsson@med.lu.se
Organization name Lund university
Department Laboratory Medicine
Lab Translational Cancer Research
Street address Medicon Village, Bldg 404:C3
City Lund
ZIP/Postal code 223 81
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE55503 Effects of siRNA targeting PRKCD in breast cancer cells

Data table header descriptions
ID_REF
VALUE Quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 102.9978 0.2636364
ILMN_2055271 120.7948 0.02207792
ILMN_1736007 94.96738 0.7636364
ILMN_2383229 91.14947 0.9298701
ILMN_1806310 97.73826 0.5714286
ILMN_1779670 103.4493 0.2467532
ILMN_1653355 90.98902 0.9324675
ILMN_1717783 88.66668 0.9779221
ILMN_1705025 96.30486 0.6766234
ILMN_1814316 95.52467 0.725974
ILMN_2359168 92.62868 0.8948052
ILMN_1731507 97.0594 0.6285715
ILMN_1787689 93.77992 0.8324676
ILMN_3241953 288.6599 0
ILMN_1745607 169.4681 0.001298701
ILMN_2136495 98.26441 0.5363637
ILMN_1668111 102.9806 0.2636364
ILMN_2295559 101.53 0.3311688
ILMN_1735045 174.6922 0
ILMN_1680754 114.1573 0.04285714

Total number of rows: 47323

Table truncated, full table size 1391 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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