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Sample GSM1338305 Query DataSets for GSM1338305
Status Public on Mar 01, 2015
Title BT-549_siControl_rep3
Sample type RNA
 
Source name BT-549 cells treated with siControl
Organism Homo sapiens
Characteristics cell line: BT-549 breast cancer cell line
treatment: siControl
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy
Label biotin
Label protocol Illumina®Totalprep-96RNA Amplification kit 4397949 RevC, (Modification of Amplification kit v 2.2)
 
Hybridization protocol WGGEX_Direct_Hybridization_Assay_EUC_11322187_A
Scan protocol Standard Illumina iScan N240 scanning protocol
Scan setting file: Direct Hyb
Description Sample name: BTc3.a1.lbe1
Data processing The data were normalized using quantile normalization with BASE
 
Submission date Mar 03, 2014
Last update date Mar 01, 2015
Contact name Christer Larsson
E-mail(s) christer.larsson@med.lu.se
Organization name Lund university
Department Laboratory Medicine
Lab Translational Cancer Research
Street address Medicon Village, Bldg 404:C3
City Lund
ZIP/Postal code 223 81
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE55503 Effects of siRNA targeting PRKCD in breast cancer cells

Data table header descriptions
ID_REF
VALUE Quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 99.46575 0.4467532
ILMN_2055271 116.8681 0.01948052
ILMN_1736007 105.3794 0.1662338
ILMN_2383229 94.58019 0.7779221
ILMN_1806310 101.4748 0.325974
ILMN_1779670 108.259 0.1
ILMN_1653355 99.99448 0.4103896
ILMN_1717783 80.91137 0.9987013
ILMN_1705025 92.41975 0.8701299
ILMN_1814316 100.0256 0.4064935
ILMN_2359168 97.09224 0.6012987
ILMN_1731507 94.88251 0.7584416
ILMN_1787689 94.02137 0.812987
ILMN_3241953 601.5027 0
ILMN_1745607 97.7451 0.5545455
ILMN_2136495 89.834 0.9454545
ILMN_1668111 96.91485 0.6090909
ILMN_2295559 95.84828 0.6779221
ILMN_1735045 444.8438 0
ILMN_1680754 117.2491 0.01688312

Total number of rows: 47323

Table truncated, full table size 1372 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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