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Sample GSM1340065 Query DataSets for GSM1340065
Status Public on Oct 01, 2014
Title liver_wt_rep3
Sample type RNA
Source name liver
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: wild type
allele: C3HeB/FeJ
age: 21 weeks
mouse id: 30228253
Sex: male
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Mar 05, 2014
Last update date Oct 01, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE55602 Jag1K295*/+ as a mouse model for Alagille syndrome

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1642.241 0
ILMN_2721178 434.8707 0
ILMN_3033922 969.2411 0
ILMN_3092673 3652.844 0
ILMN_2816356 12.37951 0.0726817
ILMN_2808939 1585.19 0
ILMN_2634564 230.5431 0
ILMN_2737647 10.63976 0.08646616
ILMN_2734484 345.6842 0
ILMN_2952292 32.78719 0.005012531
ILMN_2699078 -4.195897 0.7393484
ILMN_1213681 352.8721 0
ILMN_2735413 453.0043 0
ILMN_2735415 660.3502 0
ILMN_2891688 392.2653 0
ILMN_2637698 456.1831 0
ILMN_2674228 171.7171 0
ILMN_2601546 4.738936 0.1967418
ILMN_1230831 9.455417 0.09774436
ILMN_2848071 1584.297 0

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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