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Sample GSM1340068 Query DataSets for GSM1340068
Status Public on Oct 01, 2014
Title liver_hom_rep2
Sample type RNA
Source name liver
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygous
allele: Jag1K295*/+
age: 21 weeks
mouse id: 30228259
Sex: male
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Mar 05, 2014
Last update date Oct 01, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE55602 Jag1K295*/+ as a mouse model for Alagille syndrome

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1660.716 0
ILMN_2721178 503.7972 0
ILMN_3033922 974.7502 0
ILMN_3092673 4137.962 0
ILMN_2816356 7.072717 0.1528822
ILMN_2808939 1851.116 0
ILMN_2634564 315.9095 0
ILMN_2737647 1.658501 0.3007519
ILMN_2734484 366.5576 0
ILMN_2952292 38.32728 0
ILMN_2699078 -4.339891 0.7493734
ILMN_1213681 269.5049 0
ILMN_2735413 492.6977 0
ILMN_2735415 598.3059 0
ILMN_2891688 331.8332 0
ILMN_2637698 439.8909 0
ILMN_2674228 180.7055 0
ILMN_2601546 6.050168 0.1666667
ILMN_1230831 1.579464 0.3032582
ILMN_2848071 1556.206 0

Total number of rows: 25697

Table truncated, full table size 740 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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