NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1340069 Query DataSets for GSM1340069
Status Public on Oct 01, 2014
Title liver_hom_rep3
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics strain: C3HeB/FeJ
genotype: heterozygous
allele: Jag1K295*/+
age: 21 weeks
mouse id: 30228251
Sex: male
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Mar 05, 2014
Last update date Oct 01, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE55602 Jag1K295*/+ as a mouse model for Alagille syndrome

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1688.788 0
ILMN_2721178 449.5147 0
ILMN_3033922 870.5735 0
ILMN_3092673 3757.306 0
ILMN_2816356 12.17336 0.05263158
ILMN_2808939 2013.614 0
ILMN_2634564 268.9475 0
ILMN_2737647 13.64332 0.03759398
ILMN_2734484 332.1349 0
ILMN_2952292 32.74006 0.001253133
ILMN_2699078 -4.256418 0.7243108
ILMN_1213681 283.7503 0
ILMN_2735413 579.1215 0
ILMN_2735415 714.8149 0
ILMN_2891688 325.6498 0
ILMN_2637698 517.9659 0
ILMN_2674228 169.6437 0
ILMN_2601546 7.245414 0.1253133
ILMN_1230831 9.804117 0.07894737
ILMN_2848071 1477.568 0

Total number of rows: 25697

Table truncated, full table size 743 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap