NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1340467 Query DataSets for GSM1340467
Status Public on Mar 08, 2014
Title WT luminal rep 1
Sample type RNA
 
Source name WT luminal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Luminal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W1_Luminal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 455.2335 0
ILMN_2721178 272.1643 0
ILMN_3033922 196.6531 0
ILMN_3092673 695.1635 0
ILMN_2816356 126.9095 0.006265664
ILMN_2808939 439.9997 0
ILMN_2634564 625.6114 0
ILMN_2737647 97.82587 0.1779449
ILMN_2734484 232.7756 0
ILMN_2952292 122.8833 0.006265664
ILMN_2699078 174.7756 0
ILMN_1213681 216.6445 0
ILMN_2735413 93.37811 0.4035088
ILMN_2735415 96.06491 0.245614
ILMN_2891688 325.2217 0
ILMN_2637698 186.0727 0
ILMN_2674228 105.4262 0.03884712
ILMN_2601546 107.0522 0.02380952
ILMN_1230831 104.6536 0.04511278
ILMN_2848071 106.1088 0.03383459

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap