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Sample GSM1340469 Query DataSets for GSM1340469
Status Public on Mar 08, 2014
Title WT basal rep 1
Sample type RNA
 
Source name WT basal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W1_Basal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 331.5812 0
ILMN_2721178 214.232 0
ILMN_3033922 193.9665 0
ILMN_3092673 814.8199 0
ILMN_2816356 105.6219 0.05012531
ILMN_2808939 290.2272 0
ILMN_2634564 402.8389 0
ILMN_2737647 94.0061 0.3872181
ILMN_2734484 197.8419 0
ILMN_2952292 147.3292 0.001253133
ILMN_2699078 207.2708 0
ILMN_1213681 296.9386 0
ILMN_2735413 87.31336 0.9486216
ILMN_2735415 91.535 0.6127819
ILMN_2891688 206.2003 0
ILMN_2637698 215.9416 0
ILMN_2674228 98.23061 0.1929825
ILMN_2601546 105.9994 0.04636591
ILMN_1230831 92.57444 0.5213032
ILMN_2848071 110.8424 0.02756892

Total number of rows: 25697

Table truncated, full table size 754 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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