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Sample GSM1340470 Query DataSets for GSM1340470
Status Public on Mar 08, 2014
Title WT basal rep 2
Sample type RNA
 
Source name WT basal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W2_Basal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 273.204 0.001253133
ILMN_2721178 204.871 0.001253133
ILMN_3033922 152.9005 0.003759399
ILMN_3092673 672.9197 0
ILMN_2816356 126.6813 0.007518797
ILMN_2808939 236.5315 0.001253133
ILMN_2634564 497.8257 0
ILMN_2737647 100.2992 0.1441103
ILMN_2734484 145.0383 0.003759399
ILMN_2952292 154.1706 0.003759399
ILMN_2699078 163.4224 0.002506266
ILMN_1213681 249.0106 0.001253133
ILMN_2735413 92.15409 0.5689223
ILMN_2735415 92.36086 0.5551379
ILMN_2891688 209.4721 0.001253133
ILMN_2637698 161.8631 0.002506266
ILMN_2674228 94.89633 0.3421053
ILMN_2601546 101.09 0.1365915
ILMN_1230831 108.2581 0.05388471
ILMN_2848071 111.476 0.03383459

Total number of rows: 25697

Table truncated, full table size 790 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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