NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1340471 Query DataSets for GSM1340471
Status Public on Mar 08, 2014
Title WT stromal rep 1
Sample type RNA
 
Source name WT stromal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Stromal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W1_Stromal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 280.5289 0
ILMN_2721178 158.3835 0.001253133
ILMN_3033922 188.1299 0.001253133
ILMN_3092673 886.9889 0
ILMN_2816356 109.1749 0.02130326
ILMN_2808939 331.724 0
ILMN_2634564 434.0334 0
ILMN_2737647 100.6184 0.1077694
ILMN_2734484 142.9681 0.001253133
ILMN_2952292 142.8162 0.001253133
ILMN_2699078 197.0188 0
ILMN_1213681 353.7247 0
ILMN_2735413 90.58467 0.7218045
ILMN_2735415 89.59641 0.8082707
ILMN_2891688 166.9471 0.001253133
ILMN_2637698 171.6458 0.001253133
ILMN_2674228 102.6504 0.07518797
ILMN_2601546 99.17609 0.1378446
ILMN_1230831 89.98276 0.7907268
ILMN_2848071 100.51 0.1115288

Total number of rows: 25697

Table truncated, full table size 758 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap