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Sample GSM1340475 Query DataSets for GSM1340475
Status Public on Mar 08, 2014
Title WT luminal rep 3
Sample type RNA
 
Source name WT luminal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Luminal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W3_Luminal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 297.5401 0
ILMN_2721178 215.722 0
ILMN_3033922 152.7616 0.002506266
ILMN_3092673 608.6282 0
ILMN_2816356 118.5148 0.0112782
ILMN_2808939 315.3578 0
ILMN_2634564 504.5146 0
ILMN_2737647 109.024 0.04385965
ILMN_2734484 185.3413 0
ILMN_2952292 132.584 0.005012531
ILMN_2699078 212.859 0
ILMN_1213681 150.2226 0.002506266
ILMN_2735413 90.95343 0.7230576
ILMN_2735415 96.39875 0.3095238
ILMN_2891688 237.1256 0
ILMN_2637698 193.8711 0
ILMN_2674228 111.9784 0.01754386
ILMN_2601546 113.3164 0.01629073
ILMN_1230831 112.0358 0.01754386
ILMN_2848071 114.2211 0.01503759

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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