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Sample GSM1340475

Query DataSets for GSM1340475

Status

Public on Mar 08, 2014

Title

WT luminal rep 3

Sample type

RNA

Source name

WT luminal

Organism

Mus musculus

Characteristics

gender: Female
tissue type: mammary gland
cell population: Luminal
genotype/variation: SNAI2+/+

Extracted molecule

total RNA

Extraction protocol

RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

Label

biotin

Label protocol

not provided

Hybridization protocol

not provided

Scan protocol

not provided

Description

W3_Luminal

Data processing

The data were normalised using quantile normalization

Submission date

Mar 05, 2014

Last update date

Mar 08, 2014

Contact name

Charlotte Kuperwasser

Phone

6176365644

Organization name

Tufts University

Street address

75 Kneeland St

City

Boston

ZIP/Postal code

02111

Country

USA

Platform ID

GPL6885

Series (1)

GSE55620

Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE	quantile normalized signal
Detection P value

Data table
ID_REF	VALUE	Detection P value
ILMN_2896528	297.5401	0
ILMN_2721178	215.722	0
ILMN_3033922	152.7616	0.002506266
ILMN_3092673	608.6282	0
ILMN_2816356	118.5148	0.0112782
ILMN_2808939	315.3578	0
ILMN_2634564	504.5146	0
ILMN_2737647	109.024	0.04385965
ILMN_2734484	185.3413	0
ILMN_2952292	132.584	0.005012531
ILMN_2699078	212.859	0
ILMN_1213681	150.2226	0.002506266
ILMN_2735413	90.95343	0.7230576
ILMN_2735415	96.39875	0.3095238
ILMN_2891688	237.1256	0
ILMN_2637698	193.8711	0
ILMN_2674228	111.9784	0.01754386
ILMN_2601546	113.3164	0.01629073
ILMN_1230831	112.0358	0.01754386
ILMN_2848071	114.2211	0.01503759

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.

Supplementary data files not provided

Processed data included within Sample table