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Sample GSM1340476 Query DataSets for GSM1340476
Status Public on Mar 08, 2014
Title null luminal rep 1
Sample type RNA
 
Source name null luminal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Luminal
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N1_Luminal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 431.0188 0
ILMN_2721178 205.996 0
ILMN_3033922 149.6236 0.001253133
ILMN_3092673 662.6224 0
ILMN_2816356 138.4046 0.003759399
ILMN_2808939 361.3088 0
ILMN_2634564 704.5676 0
ILMN_2737647 102.7131 0.0839599
ILMN_2734484 175.4456 0.001253133
ILMN_2952292 143.2331 0.002506266
ILMN_2699078 224.2695 0
ILMN_1213681 316.4404 0
ILMN_2735413 90.44899 0.7619048
ILMN_2735415 93.39481 0.4699248
ILMN_2891688 255.1579 0
ILMN_2637698 178.2449 0.001253133
ILMN_2674228 96.55767 0.2581454
ILMN_2601546 91.87534 0.6115288
ILMN_1230831 100.6025 0.1177945
ILMN_2848071 104.0082 0.07017544

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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