GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM1340477

Query DataSets for GSM1340477

Status

Public on Mar 08, 2014

Title

WT basal rep 3

Sample type

RNA

Source name

WT basal

Organism

Mus musculus

Characteristics

gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2+/+

Extracted molecule

total RNA

Extraction protocol

RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

Label

biotin

Label protocol

not provided

Hybridization protocol

not provided

Scan protocol

not provided

Description

W3_Basal

Data processing

The data were normalised using quantile normalization

Submission date

Mar 05, 2014

Last update date

Mar 08, 2014

Contact name

Charlotte Kuperwasser

Phone

6176365644

Organization name

Tufts University

Street address

75 Kneeland St

City

Boston

ZIP/Postal code

02111

Country

USA

Platform ID

GPL6885

Series (1)

GSE55620

Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE	quantile normalized signal
Detection P value

Data table
ID_REF	VALUE	Detection P value
ILMN_2896528	278.1859	0.001253133
ILMN_2721178	205.8391	0.001253133
ILMN_3033922	203.0392	0.001253133
ILMN_3092673	577.4829	0
ILMN_2816356	105.4712	0.08897243
ILMN_2808939	245.5071	0.001253133
ILMN_2634564	479.6273	0
ILMN_2737647	97.05649	0.2769423
ILMN_2734484	141.3714	0.003759399
ILMN_2952292	165.1479	0.001253133
ILMN_2699078	200.2763	0.001253133
ILMN_1213681	155.6454	0.001253133
ILMN_2735413	90.34377	0.7593985
ILMN_2735415	91.85715	0.6052632
ILMN_2891688	126.2997	0.005012531
ILMN_2637698	278.6179	0.001253133
ILMN_2674228	120.3627	0.01002506
ILMN_2601546	101.5518	0.1503759
ILMN_1230831	106.9535	0.06766918
ILMN_2848071	122.4416	0.00877193

Total number of rows: 25697

Table truncated, full table size 793 Kbytes.

Supplementary data files not provided

Processed data included within Sample table