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Sample GSM1340477 Query DataSets for GSM1340477
Status Public on Mar 08, 2014
Title WT basal rep 3
Sample type RNA
 
Source name WT basal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W3_Basal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 278.1859 0.001253133
ILMN_2721178 205.8391 0.001253133
ILMN_3033922 203.0392 0.001253133
ILMN_3092673 577.4829 0
ILMN_2816356 105.4712 0.08897243
ILMN_2808939 245.5071 0.001253133
ILMN_2634564 479.6273 0
ILMN_2737647 97.05649 0.2769423
ILMN_2734484 141.3714 0.003759399
ILMN_2952292 165.1479 0.001253133
ILMN_2699078 200.2763 0.001253133
ILMN_1213681 155.6454 0.001253133
ILMN_2735413 90.34377 0.7593985
ILMN_2735415 91.85715 0.6052632
ILMN_2891688 126.2997 0.005012531
ILMN_2637698 278.6179 0.001253133
ILMN_2674228 120.3627 0.01002506
ILMN_2601546 101.5518 0.1503759
ILMN_1230831 106.9535 0.06766918
ILMN_2848071 122.4416 0.00877193

Total number of rows: 25697

Table truncated, full table size 793 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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