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Sample GSM1340479 Query DataSets for GSM1340479
Status Public on Mar 08, 2014
Title WT stromal rep 3
Sample type RNA
 
Source name WT stromal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Stromal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W3_Stromal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 342.2054 0
ILMN_2721178 197.6359 0.001253133
ILMN_3033922 242.1759 0.001253133
ILMN_3092673 854.8446 0
ILMN_2816356 103.1447 0.1428571
ILMN_2808939 252.1525 0.001253133
ILMN_2634564 458.2234 0
ILMN_2737647 108.7118 0.08521304
ILMN_2734484 106.0843 0.1077694
ILMN_2952292 102.0354 0.1654135
ILMN_2699078 179.0176 0.001253133
ILMN_1213681 161.3035 0.002506266
ILMN_2735413 98.84628 0.2380952
ILMN_2735415 91.53815 0.6616541
ILMN_2891688 131.1833 0.003759399
ILMN_2637698 268.2891 0.001253133
ILMN_2674228 110.8778 0.06265664
ILMN_2601546 93.57945 0.4774436
ILMN_1230831 104.1888 0.131579
ILMN_2848071 121.8733 0.01629073

Total number of rows: 25697

Table truncated, full table size 786 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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