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Sample GSM1340480 Query DataSets for GSM1340480
Status Public on Mar 08, 2014
Title null stromal rep 1
Sample type RNA
 
Source name null stromal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Stromal
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N1_Stromal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 361.9338 0
ILMN_2721178 220.5765 0
ILMN_3033922 169.3782 0.001253133
ILMN_3092673 806.9119 0
ILMN_2816356 109.0964 0.02631579
ILMN_2808939 394.3558 0
ILMN_2634564 369.7112 0
ILMN_2737647 95.5008 0.3145363
ILMN_2734484 198.4769 0
ILMN_2952292 132.975 0.003759399
ILMN_2699078 169.256 0.001253133
ILMN_1213681 226.6603 0
ILMN_2735413 92.14025 0.5914787
ILMN_2735415 89.57168 0.7994987
ILMN_2891688 255.6223 0
ILMN_2637698 202.7463 0
ILMN_2674228 108.9016 0.02631579
ILMN_2601546 93.45552 0.4661654
ILMN_1230831 100.016 0.1340852
ILMN_2848071 109.6865 0.02631579

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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