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Sample GSM1340482 Query DataSets for GSM1340482
Status Public on Mar 08, 2014
Title null unsort rep 3
Sample type RNA
 
Source name null unsort
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Unsorted
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N3_Unsorted
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 293.4948 0
ILMN_2721178 174.7596 0.001253133
ILMN_3033922 165.9124 0.001253133
ILMN_3092673 632.3087 0
ILMN_2816356 107.7426 0.0112782
ILMN_2808939 254.1417 0
ILMN_2634564 543.7506 0
ILMN_2737647 103.5543 0.03007519
ILMN_2734484 130.1674 0.002506266
ILMN_2952292 122.9416 0.002506266
ILMN_2699078 174.8702 0.001253133
ILMN_1213681 169.8207 0.001253133
ILMN_2735413 91.05646 0.5927318
ILMN_2735415 89.7224 0.7593985
ILMN_2891688 188.6041 0.001253133
ILMN_2637698 245.8297 0
ILMN_2674228 103.2764 0.03132832
ILMN_2601546 103.1031 0.03383459
ILMN_1230831 98.41317 0.1102757
ILMN_2848071 95.82103 0.1854637

Total number of rows: 25697

Table truncated, full table size 772 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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