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Sample GSM1340485 Query DataSets for GSM1340485
Status Public on Mar 08, 2014
Title null basal rep 2
Sample type RNA
 
Source name null basal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N2_Basal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 274.0964 0
ILMN_2721178 198.7051 0.001253133
ILMN_3033922 181.948 0.001253133
ILMN_3092673 695.4395 0
ILMN_2816356 113.8199 0.02631579
ILMN_2808939 283.6439 0
ILMN_2634564 431.9248 0
ILMN_2737647 104.5234 0.0989975
ILMN_2734484 121.2881 0.0112782
ILMN_2952292 133.4297 0.007518797
ILMN_2699078 205.7852 0.001253133
ILMN_1213681 126.5838 0.01002506
ILMN_2735413 101.4506 0.1491228
ILMN_2735415 88.69275 0.8847118
ILMN_2891688 159.35 0.003759399
ILMN_2637698 249.3298 0.001253133
ILMN_2674228 90.48605 0.7456141
ILMN_2601546 114.9293 0.02130326
ILMN_1230831 94.26781 0.4047619
ILMN_2848071 108.8495 0.05639098

Total number of rows: 25697

Table truncated, full table size 774 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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