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Sample GSM1340486 Query DataSets for GSM1340486
Status Public on Mar 08, 2014
Title null basal rep 3
Sample type RNA
 
Source name null basal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N3_Basal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 301.8706 0
ILMN_2721178 208.4755 0.001253133
ILMN_3033922 169.0282 0.001253133
ILMN_3092673 586.8646 0
ILMN_2816356 99.54497 0.1390978
ILMN_2808939 311.8134 0
ILMN_2634564 483.9527 0
ILMN_2737647 100.7491 0.1152882
ILMN_2734484 118.4593 0.01002506
ILMN_2952292 134.9113 0.006265664
ILMN_2699078 215.4988 0.001253133
ILMN_1213681 167.503 0.001253133
ILMN_2735413 89.66939 0.7932331
ILMN_2735415 92.4559 0.5200501
ILMN_2891688 147.7525 0.001253133
ILMN_2637698 252.0766 0.001253133
ILMN_2674228 104.3328 0.06641604
ILMN_2601546 110.9404 0.02380952
ILMN_1230831 96.59413 0.2343358
ILMN_2848071 117.5673 0.01002506

Total number of rows: 25697

Table truncated, full table size 775 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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