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Sample GSM1340487 Query DataSets for GSM1340487
Status Public on Mar 08, 2014
Title null stromal rep 2
Sample type RNA
 
Source name null stromal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Stromal
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N2_Stromal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 274.1548 0.001253133
ILMN_2721178 204.1332 0.001253133
ILMN_3033922 219.6372 0.001253133
ILMN_3092673 845.0597 0
ILMN_2816356 114.0918 0.03884712
ILMN_2808939 249.3888 0.001253133
ILMN_2634564 468.6415 0
ILMN_2737647 101.7158 0.160401
ILMN_2734484 113.0469 0.04010025
ILMN_2952292 124.2136 0.01378446
ILMN_2699078 187.0162 0.001253133
ILMN_1213681 164.1301 0.002506266
ILMN_2735413 92.09677 0.6002506
ILMN_2735415 92.89198 0.5300752
ILMN_2891688 124.4169 0.01378446
ILMN_2637698 209.6749 0.001253133
ILMN_2674228 115.7771 0.03508772
ILMN_2601546 107.2862 0.0914787
ILMN_1230831 110.9785 0.05639098
ILMN_2848071 134.4696 0.006265664

Total number of rows: 25697

Table truncated, full table size 777 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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