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Sample GSM1340488 Query DataSets for GSM1340488
Status Public on Mar 08, 2014
Title null stromal rep 3
Sample type RNA
 
Source name null stromal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Stromal
genotype/variation: SNAI2 null
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description N3_Stromal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 313.4015 0
ILMN_2721178 194.9289 0.001253133
ILMN_3033922 285.8059 0
ILMN_3092673 860.5854 0
ILMN_2816356 114.4651 0.01002506
ILMN_2808939 236.8928 0
ILMN_2634564 506.6049 0
ILMN_2737647 104.3876 0.06015038
ILMN_2734484 148.7408 0.002506266
ILMN_2952292 119.6161 0.005012531
ILMN_2699078 174.6105 0.001253133
ILMN_1213681 148.8539 0.002506266
ILMN_2735413 91.55263 0.6691729
ILMN_2735415 107.3855 0.02631579
ILMN_2891688 168.5888 0.001253133
ILMN_2637698 252.4568 0
ILMN_2674228 101.2747 0.1152882
ILMN_2601546 106.093 0.04385965
ILMN_1230831 103.0565 0.08270676
ILMN_2848071 108.269 0.02255639

Total number of rows: 25697

Table truncated, full table size 766 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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