NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1340522 Query DataSets for GSM1340522
Status Public on Mar 06, 2014
Title parental biological replicate 2
Sample type RNA
 
Source name SW480 cells
Organism Homo sapiens
Characteristics lineage: colorectal
cell line: SW480
treatment: none
Treatment protocol 2.5 million cells were resuspended in 10ml of fresh media in 10cm dishes. The next day, DMSO, TNKS inhibitor, MEKi inhibitor or the combination of both was added for 4hrs and 16hrs
Growth protocol SW480 cells were cultured in 10% FBS RPMI.
Extracted molecule total RNA
Extraction protocol RNeasy Plus kit (qiagen) following the manufacturers instructions
Label biotin
Label protocol Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
 
Hybridization protocol Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
Scan protocol GeneChip Scanner 3000 (Affymetrix Inc.)
Description Gene expression data from SW480 cells before treatment
Data processing Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
 
Submission date Mar 05, 2014
Last update date Mar 06, 2014
Contact name Joshua M Korn
E-mail(s) joshkorn@gmail.com
Organization name Novartis
Street address 250 Mass Ave
City Cambridge
State/province MA
ZIP/Postal code 02141
Country USA
 
Platform ID GPL570
Series (1)
GSE55624 Inhibiting tankyrases sensitizes KRAS mutant cancer cells to MEK inhibitors by FGFR2 feedback signaling

Data table header descriptions
ID_REF
VALUE MAS5 with a target trimmed mean of 150

Data table
ID_REF VALUE
AFFX-BioB-5_at 244.1
AFFX-BioB-M_at 393.2
AFFX-BioB-3_at 344.7
AFFX-BioC-5_at 750
AFFX-BioC-3_at 658.3
AFFX-BioDn-5_at 1532.8
AFFX-BioDn-3_at 2063.4
AFFX-CreX-5_at 4012.5
AFFX-CreX-3_at 3655.5
AFFX-DapX-5_at 47.8
AFFX-DapX-M_at 105.4
AFFX-DapX-3_at 261.7
AFFX-LysX-5_at 18.3
AFFX-LysX-M_at 27.9
AFFX-LysX-3_at 40.4
AFFX-PheX-5_at 14.9
AFFX-PheX-M_at 23.6
AFFX-PheX-3_at 39.4
AFFX-ThrX-5_at 13.6
AFFX-ThrX-M_at 13.6

Total number of rows: 54675

Table truncated, full table size 828 Kbytes.




Supplementary file Size Download File type/resource
GSM1340522_NUID-0000-0150-5237.CEL.gz 5.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap