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Sample GSM1340538 Query DataSets for GSM1340538
Status Public on Mar 06, 2014
Title Combo 16h biological replicate 2
Sample type RNA
Source name SW480 cells
Organism Homo sapiens
Characteristics lineage: colorectal
cell line: SW480
treatment: treated with MEK+TNKS inhibitors for 16h
Treatment protocol 2.5 million cells were resuspended in 10ml of fresh media in 10cm dishes. The next day, DMSO, TNKS inhibitor, MEKi inhibitor or the combination of both was added for 4hrs and 16hrs
Growth protocol SW480 cells were cultured in 10% FBS RPMI.
Extracted molecule total RNA
Extraction protocol RNeasy Plus kit (qiagen) following the manufacturers instructions
Label biotin
Label protocol Nugen Ovation RNA Amplification System+ WB + FL cDNA Biotin Module V2 (NuGen Lts)
Hybridization protocol Affymetrix GeneChip eukaryotic hybridization protocol (Affymetrix Inc.)
Scan protocol GeneChip Scanner 3000 (Affymetrix Inc.)
Description Gene expression data from SW480 cells treated with MEK+TNKS inhibitors for 16h
Data processing Micorarray Analysis Suite version 5.0 (MAS 5.0) background correction, scaled to 150
Submission date Mar 05, 2014
Last update date Mar 06, 2014
Contact name Joshua M Korn
Organization name Novartis
Street address 250 Mass Ave
City Cambridge
State/province MA
ZIP/Postal code 02141
Country USA
Platform ID GPL570
Series (1)
GSE55624 Inhibiting tankyrases sensitizes KRAS mutant cancer cells to MEK inhibitors by FGFR2 feedback signaling

Data table header descriptions
VALUE MAS5 with a target trimmed mean of 150

Data table
AFFX-BioB-5_at 234.3
AFFX-BioB-M_at 376.1
AFFX-BioB-3_at 319.3
AFFX-BioC-5_at 703.5
AFFX-BioC-3_at 647.8
AFFX-BioDn-5_at 1433.7
AFFX-BioDn-3_at 1937.7
AFFX-CreX-5_at 4162
AFFX-CreX-3_at 3643.1
AFFX-DapX-5_at 66.5
AFFX-DapX-M_at 122.3
AFFX-DapX-3_at 265
AFFX-LysX-5_at 21.4
AFFX-LysX-M_at 25.9
AFFX-LysX-3_at 43
AFFX-PheX-5_at 14.5
AFFX-PheX-M_at 28.3
AFFX-PheX-3_at 50.6
AFFX-ThrX-5_at 12.7
AFFX-ThrX-M_at 15

Total number of rows: 54675

Table truncated, full table size 829 Kbytes.

Supplementary file Size Download File type/resource
GSM1340538_NUID-0000-0150-5249.CEL.gz 5.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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