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Status
Public on Sep 07, 2006
Title
HeLa mock-b vs. HeLa MPHOSPH1-2692-AS_pos2_modified-b
Sample type
RNA
Channel 1 Source name
HeLa
Organism
Homo sapiens Characteristics
cell line: HeLa
Extracted molecule
total RNA
Label
Cy3
Channel 2 Source name
HeLa
Organism
Homo sapiens Characteristics
cell line: HeLa
Extracted molecule
total RNA
Label
Cy5
Description
For details please see: Jackson AL, Burchard J, Leake D, Reynolds A, Schelter J, Guo J, Johnson JM, Lim L, Karpilow J, Nichols K, Marshall W, Kvorova A, and Linsley PS. RNA (2006) 12(7):1197-1205
Data processing
Local background correction
Submission date
Sep 01, 2006
Last update date
Jul 22, 2009
Contact name
Aimee Jackson
Organization name
Regulus Therapeutics
Street address
1896 Rutherford Rd
City
Carlsbad
State/province
CA
ZIP/Postal code
92008
Country
USA
Platform ID
GPL3991 Series (1)
GSE5769 Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing
Data table header descriptions ID_REF Rosetta generated unique probe identifier
VALUE same as UNF_VALUE but with flagged values removed: Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
LOGINTENSITY Corrected average log intensity of channels
INTENSITY1 Raw Cy3 intensity (CH1)
INTENSITY2 Raw Cy5 intensity (CH2)
PVALUE P-value of LogRatio
QUALITY 1 - if good and non control, 0 - otherwise
UNF_VALUE Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
Data table ID_REF VALUE LOGINTENSITY INTENSITY1 INTENSITY2 PVALUE QUALITY UNF_VALUE 10019475365
0.0568
-1.1980
0.0598
0.0680
6.9243e-001
1
0.0568
10019481149
0.1142
-0.3150
0.4246
0.5522
2.2492e-002
1
0.1142
10019495284
-0.0129
-0.1677
0.6900
0.6708
8.0736e-001
1
-0.0129
10019687586
-0.0289
-1.2361
0.0601
0.0562
8.2999e-001
1
-0.0289
10019713746
0.0377
-0.9463
0.1091
0.1190
6.4949e-001
1
0.0377
10019799479
0.0233
-1.1228
0.0734
0.0775
8.1742e-001
1
0.0233
10019809115
0.0308
-0.7638
0.1675
0.1795
6.6344e-001
1
0.0308
10019874890
0.0119
-1.0249
0.0962
0.0985
9.1945e-001
1
0.0119
10019909307
0.0608
-0.8615
0.1295
0.1488
4.7457e-001
1
0.0608
10019911222
-0.0171
-0.5193
0.3087
0.2966
7.5112e-001
1
-0.0171
10019924807
-0.0689
-1.9809
0.0115
0.0099
9.2074e-001
1
-0.0689
10019927856
-0.0368
-0.2048
0.6530
0.5983
5.0415e-001
1
-0.0368
10019932383
0.0211
-0.3105
0.4782
0.5034
6.9870e-001
1
0.0211
10019948931
-0.0225
-1.0898
0.0837
0.0795
8.4560e-001
1
-0.0225
10019975533
-0.0593
-1.4831
0.0357
0.0320
8.4000e-001
1
-0.0593
10019977227
-0.1856
-0.3244
0.5896
0.3822
6.1789e-003
1
-0.1856
10019987588
0.0156
-1.0411
0.0894
0.0927
8.5763e-001
1
0.0156
10020008603
0.0256
-0.8446
0.1388
0.1478
7.7582e-001
1
0.0256
10020014121
-0.0445
0.0204
1.1107
0.9953
5.2479e-001
1
-0.0445
10020044367
0.0682
-0.7489
0.1669
0.1959
3.7609e-001
1
0.0682
23441 1433 Kbytes .Supplementary data files not provided Processed data included within Sample table
