NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM134333 Query DataSets for GSM134333
Status Public on Sep 07, 2006
Title HeLa mock-b vs. HeLa SOS1-1582-AS_pos2_modified-b
Sample type RNA
 
Channel 1
Source name HeLa
Organism Homo sapiens
Characteristics cell line: HeLa
conditions: mock-b
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name HeLa
Organism Homo sapiens
Characteristics cell line: HeLa
conditions: SOS1-1582-AS_pos2_modified-b
Extracted molecule total RNA
Label Cy5
 
 
Description For details please see: Jackson AL, Burchard J, Leake D, Reynolds A, Schelter J, Guo J, Johnson JM, Lim L, Karpilow J, Nichols K, Marshall W, Kvorova A, and Linsley PS. RNA (2006) 12(7):1197-1205
Data processing Local background correction
 
Submission date Sep 01, 2006
Last update date Jul 22, 2009
Contact name Aimee Jackson
Organization name Regulus Therapeutics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92008
Country USA
 
Platform ID GPL3991
Series (1)
GSE5769 Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE same as UNF_VALUE but with flagged values removed: Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
LOGINTENSITY Corrected average log intensity of channels
INTENSITY1 Raw Cy3 intensity (CH1)
INTENSITY2 Raw Cy5 intensity (CH2)
PVALUE P-value of LogRatio
QUALITY 1 - if good and non control, 0 - otherwise
UNF_VALUE Corrected (normalized) Log10 Ratio of channels (CH2/CH1)

Data table
ID_REF VALUE LOGINTENSITY INTENSITY1 INTENSITY2 PVALUE QUALITY UNF_VALUE
10019475365 0.0053 -1.0597 0.0888 0.0896 9.3435e-001 1 0.0053
10019481149 -0.0305 -0.3324 0.4880 0.4551 4.9005e-001 1 -0.0305
10019495284 -0.0560 -0.1880 0.6920 0.6083 2.9282e-001 1 -0.0560
10019687586 -0.0249 -1.2192 0.0622 0.0588 6.9997e-001 1 -0.0249
10019713746 0.0110 -0.9923 0.1024 0.1051 8.3087e-001 1 0.0110
10019799479 -0.0175 -0.9230 0.1221 0.1174 7.4457e-001 1 -0.0175
10019809115 0.0197 -0.6898 0.2027 0.2129 6.9634e-001 1 0.0197
10019874890 0.0012 -1.0506 0.0954 0.0956 9.8408e-001 1 0.0012
10019909307 -0.0000 -0.9926 0.1021 0.1019 9.9952e-001 1 -0.0000
10019911222 -0.1044 -0.5329 0.3307 0.2600 4.9063e-002 1 -0.1044
10019924807 -0.0509 -1.6303 0.0265 0.0234 6.6910e-001 1 -0.0509
10019927856 -0.0488 -0.1742 0.7102 0.6334 3.4581e-001 1 -0.0488
10019932383 0.0856 -0.2807 0.4755 0.5817 1.2153e-001 1 0.0856
10019948931 -0.0247 -1.2095 0.0641 0.0602 7.6520e-001 1 -0.0247
10019975533 -0.0001 -1.5340 0.0321 0.0312 9.9951e-001 1 -0.0001
10019977227 -0.1327 -0.2775 0.6164 0.4530 3.9950e-002 1 -0.1327
10019987588 -0.0180 -1.0153 0.0996 0.0958 7.6146e-001 1 -0.0180
10020008603 0.0026 -0.8470 0.1472 0.1468 9.6413e-001 1 0.0026
10020014121 0.0012 0.0523 1.1309 1.1303 9.8634e-001 1 0.0012
10020044367 0.0198 -0.7271 0.1844 0.1925 7.0780e-001 1 0.0198

Total number of rows: 23441

Table truncated, full table size 1437 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap