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Sample GSM1346053 Query DataSets for GSM1346053
Status Public on Mar 09, 2017
Title PDGFRb-TK treated with control IgG rep1
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: control IgG
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 166
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 2.8 0.64957
ILMN_2762289 7.3 0.43056
ILMN_2896528 2443 0
ILMN_2721178 649 0
ILMN_2458837 7.9 0.40598
ILMN_3033922 624.1 0
ILMN_3092673 2690.7 0
ILMN_1230777 1822 0
ILMN_1246069 932 0
ILMN_1232042 -8.6 0.9765
ILMN_1243193 633 0
ILMN_2524361 12.1 0.22863
ILMN_1242440 7.1 0.44124
ILMN_1233188 20.4 0.07692
ILMN_2543688 347.3 0
ILMN_1259789 23.7 0.05128
ILMN_2816356 12.4 0.21688
ILMN_1224596 67.1 0
ILMN_1233643 6.7 0.45833
ILMN_2808939 487.3 0

Total number of rows: 45281

Table truncated, full table size 1061 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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