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Sample GSM1346054 Query DataSets for GSM1346054
Status Public on Mar 09, 2017
Title PDGFRb-TK treated with control IgG rep2
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: control IgG
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 603
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 10.4 0.32265
ILMN_2762289 21.5 0.06303
ILMN_2896528 2198.1 0
ILMN_2721178 684.7 0
ILMN_2458837 3.7 0.75748
ILMN_3033922 514.4 0
ILMN_3092673 2461 0
ILMN_1230777 1669.6 0
ILMN_1246069 946.2 0
ILMN_1232042 0.1 0.92308
ILMN_1243193 687.3 0
ILMN_2524361 -2.6 0.98077
ILMN_1242440 14.9 0.15705
ILMN_1233188 15.7 0.13248
ILMN_2543688 192.7 0
ILMN_1259789 19.2 0.0812
ILMN_2816356 29.7 0.02671
ILMN_1224596 64.3 0
ILMN_1233643 9.7 0.36004
ILMN_2808939 500.3 0

Total number of rows: 45281

Table truncated, full table size 1059 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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