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Sample GSM1346055 Query DataSets for GSM1346055
Status Public on Mar 09, 2017
Title PDGFRb-TK treated with control IgG rep3
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: control IgG
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 191
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 10.9 0.32051
ILMN_2762289 11.9 0.25107
ILMN_2896528 2058 0
ILMN_2721178 613.5 0
ILMN_2458837 4.7 0.77244
ILMN_3033922 373.3 0
ILMN_3092673 2485.4 0
ILMN_1230777 1527.8 0
ILMN_1246069 1010.9 0
ILMN_1232042 5 0.74679
ILMN_1243193 564.4 0
ILMN_2524361 5.5 0.70085
ILMN_1242440 4.7 0.77671
ILMN_1233188 29 0.01389
ILMN_2543688 374 0
ILMN_1259789 20.8 0.05021
ILMN_2816356 28.6 0.01496
ILMN_1224596 72.9 0
ILMN_1233643 8.2 0.49359
ILMN_2808939 496.2 0

Total number of rows: 45281

Table truncated, full table size 1052 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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