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Sample GSM1346056 Query DataSets for GSM1346056
Status Public on Mar 09, 2017
Title PDGFRb-TK treated with anti-Ang2 antibody rep1
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: anti-Ang2 antibody
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 172
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 4.2 0.49573
ILMN_2762289 12.4 0.19017
ILMN_2896528 2372.6 0
ILMN_2721178 773.5 0
ILMN_2458837 -9.5 0.98611
ILMN_3033922 668.3 0
ILMN_3092673 2584.9 0
ILMN_1230777 1859.1 0
ILMN_1246069 1124.7 0
ILMN_1232042 -9.9 0.98932
ILMN_1243193 709.8 0
ILMN_2524361 11.4 0.22222
ILMN_1242440 2.7 0.58227
ILMN_1233188 25.9 0.03846
ILMN_2543688 441.8 0
ILMN_1259789 33.3 0.02137
ILMN_2816356 22.4 0.05876
ILMN_1224596 76.5 0
ILMN_1233643 6 0.42094
ILMN_2808939 528.5 0

Total number of rows: 45281

Table truncated, full table size 1066 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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