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Sample GSM1346057 Query DataSets for GSM1346057
Status Public on Mar 09, 2017
Title PDGFRb-TK treated with anti-Ang2 antibody rep2
Sample type RNA
 
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: anti-Ang2 antibody
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 173
GCV injected
Data processing GenomeStudio
 
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
E-mail(s) vlebleumdaprofessional@gmail.com
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
ID_REF
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 8.6 0.24466
ILMN_2762289 18 0.0641
ILMN_2896528 2195.9 0
ILMN_2721178 634.4 0
ILMN_2458837 -4.4 0.83547
ILMN_3033922 644.3 0
ILMN_3092673 3662.1 0
ILMN_1230777 2547.3 0
ILMN_1246069 1182.2 0
ILMN_1232042 -14.1 0.99145
ILMN_1243193 648.8 0
ILMN_2524361 8.3 0.24893
ILMN_1242440 12.7 0.14637
ILMN_1233188 72.4 0
ILMN_2543688 1307.9 0
ILMN_1259789 19.6 0.05342
ILMN_2816356 18.4 0.06197
ILMN_1224596 45.4 0.00427
ILMN_1233643 3 0.4594
ILMN_2808939 610.2 0

Total number of rows: 45281

Table truncated, full table size 1064 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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