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Sample GSM1346059 Query DataSets for GSM1346059
Status Public on Mar 09, 2017
Title WT treated with control IgG rep1
Sample type RNA
 
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: control IgG
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 180
GCV injected
Data processing GenomeStudio
 
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
E-mail(s) vlebleumdaprofessional@gmail.com
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
ID_REF
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 13 0.26709
ILMN_2762289 13.4 0.25321
ILMN_2896528 1818 0
ILMN_2721178 561.9 0
ILMN_2458837 4.9 0.74679
ILMN_3033922 444.1 0
ILMN_3092673 2673.1 0
ILMN_1230777 1824.1 0
ILMN_1246069 1039.6 0
ILMN_1232042 2.1 0.87714
ILMN_1243193 605.9 0
ILMN_2524361 7.5 0.5812
ILMN_1242440 6.7 0.63675
ILMN_1233188 60.2 0
ILMN_2543688 648.8 0
ILMN_1259789 25 0.02885
ILMN_2816356 26 0.0235
ILMN_1224596 74.1 0
ILMN_1233643 4.3 0.78419
ILMN_2808939 475.1 0

Total number of rows: 45281

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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