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Sample GSM1346060 Query DataSets for GSM1346060
Status Public on Mar 09, 2017
Title WT treated with control IgG rep2
Sample type RNA
 
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: control IgG
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 186
GCV injected
Data processing GenomeStudio
 
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
E-mail(s) vlebleumdaprofessional@gmail.com
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
ID_REF
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 13.1 0.41132
ILMN_2762289 27.5 0.0438
ILMN_2896528 1799.7 0
ILMN_2721178 525 0
ILMN_2458837 0.4 0.97009
ILMN_3033922 333.7 0
ILMN_3092673 2622.5 0
ILMN_1230777 1842.8 0
ILMN_1246069 737.2 0
ILMN_1232042 6.4 0.78846
ILMN_1243193 589 0
ILMN_2524361 13.4 0.40064
ILMN_1242440 9.4 0.61432
ILMN_1233188 40.5 0.00962
ILMN_2543688 334.8 0
ILMN_1259789 29.9 0.03205
ILMN_2816356 25.4 0.05235
ILMN_1224596 110.1 0
ILMN_1233643 11.9 0.49252
ILMN_2808939 645.9 0

Total number of rows: 45281

Table truncated, full table size 1064 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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