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Sample GSM1346061 Query DataSets for GSM1346061
Status Public on Mar 09, 2017
Title WT treated with control IgG rep3
Sample type RNA
 
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: control IgG
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: WT
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 188
GCV injected
Data processing GenomeStudio
 
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
E-mail(s) vlebleumdaprofessional@gmail.com
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
 
Platform ID GPL6887
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
ID_REF
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2417611 12.5 0.41346
ILMN_2762289 12.1 0.44658
ILMN_2896528 1970.7 0
ILMN_2721178 526.2 0
ILMN_2458837 3.1 0.97009
ILMN_3033922 460.7 0
ILMN_3092673 2526.8 0
ILMN_1230777 1642.9 0
ILMN_1246069 692.2 0
ILMN_1232042 2.6 0.97756
ILMN_1243193 451.6 0
ILMN_2524361 12.6 0.41132
ILMN_1242440 7.8 0.77671
ILMN_1233188 45.1 0.00107
ILMN_2543688 437.8 0
ILMN_1259789 23.8 0.04594
ILMN_2816356 15.1 0.25534
ILMN_1224596 78.2 0
ILMN_1233643 15.1 0.25748
ILMN_2808939 431.3 0

Total number of rows: 45281

Table truncated, full table size 1057 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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