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Sample GSM1346065 Query DataSets for GSM1346065
Status Public on Mar 09, 2017
Title PDGFRb-TK early pericyte ablation
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: early pericyte ablation
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description PDGFRB-TK Early
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6885
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1978.7 0
ILMN_2721178 413.3 0
ILMN_3033922 456.8 0
ILMN_3092673 2538.6 0
ILMN_2816356 5.4 0.92105
ILMN_2808939 518.8 0
ILMN_2634564 422.4 0
ILMN_2737647 12.6 0.48622
ILMN_2734484 162.4 0
ILMN_2952292 100.9 0
ILMN_2699078 2.6 0.97619
ILMN_1213681 154.1 0
ILMN_2735413 11.5 0.55764
ILMN_2735415 21.5 0.11153
ILMN_2891688 189.7 0
ILMN_2637698 1006.5 0
ILMN_2674228 191.2 0
ILMN_2601546 17.6 0.23183
ILMN_1230831 9.1 0.72431
ILMN_2848071 15.3 0.33835

Total number of rows: 25697

Table truncated, full table size 591 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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