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Sample GSM1346067 Query DataSets for GSM1346067
Status Public on Mar 09, 2017
Title PDGFRb-TK late pericyte ablation
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: late pericyte ablation
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description PDGFRB-TK Late
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6885
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2056 0
ILMN_2721178 614.1 0
ILMN_3033922 487.3 0
ILMN_3092673 2865.5 0
ILMN_2816356 30.3 0.07895
ILMN_2808939 384.2 0
ILMN_2634564 425.9 0
ILMN_2737647 26.2 0.10276
ILMN_2734484 158.2 0
ILMN_2952292 33.4 0.06266
ILMN_2699078 -0.6 0.76942
ILMN_1213681 170.1 0
ILMN_2735413 15.5 0.2619
ILMN_2735415 14.4 0.28446
ILMN_2891688 111.8 0
ILMN_2637698 796.6 0
ILMN_2674228 184.9 0
ILMN_2601546 30.2 0.0802
ILMN_1230831 29 0.09023
ILMN_2848071 55.8 0.00752

Total number of rows: 25697

Table truncated, full table size 601 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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