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Sample GSM1346068 Query DataSets for GSM1346068
Status Public on Mar 09, 2017
Title PDGFRb-TK late pericyte ablation control
Sample type RNA
Source name 4T1 breast tumor
Organism Mus musculus
Characteristics treatment: late pericyte ablation control
pdgfrb tk: Positive
tissue: 4T1 breast tumor
genotype: PDGFRb-TK
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description WT Late
GCV injected
Data processing GenomeStudio
Submission date Mar 11, 2014
Last update date Mar 09, 2017
Contact name Valerie LeBleu
Organization name MDACC
Street address 1881 East Road
City Houston
State/province TX
ZIP/Postal code 77054
Country USA
Platform ID GPL6885
Series (1)
GSE55785 Gene Expression Analysis of 4T1 orthotopic tumors in PDGFRb-TK mice

Data table header descriptions
VALUE Rank Invariant Background Subtracted
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2028.6 0
ILMN_2721178 519.4 0
ILMN_3033922 462.3 0
ILMN_3092673 2422.5 0
ILMN_2816356 42.2 0.00752
ILMN_2808939 468.3 0
ILMN_2634564 307.8 0
ILMN_2737647 31.9 0.0401
ILMN_2734484 206.9 0
ILMN_2952292 57.4 0.00251
ILMN_2699078 -3.4 0.82206
ILMN_1213681 202 0
ILMN_2735413 3.7 0.51754
ILMN_2735415 17.9 0.13409
ILMN_2891688 110.7 0
ILMN_2637698 1031.7 0
ILMN_2674228 224 0
ILMN_2601546 13.6 0.2005
ILMN_1230831 11 0.26566
ILMN_2848071 47.4 0.00251

Total number of rows: 25697

Table truncated, full table size 601 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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