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Sample GSM134720 Query DataSets for GSM134720
Status Public on Sep 10, 2006
Title dStr, biological rep2
Sample type RNA
 
Source name dorsal striatum
Organism Mus musculus
Characteristics Male C57Bl/6J mouse
12 weeks old at the time of sacrifice
Treatment protocol Mice were briefly anesthetized with isoflurane then rapidly decapitated. Brains were submerged in oxygenated (95% O2-5% CO2) ice-cold sucrose-artificial cerebrospinal fluid solution (in mM: 194 sucrose, 20 NaCl, 4.4 KCl, 2 CaCl2, 1 MgCl2, 1.2 NaH2PO4, 10.0 glucose, and 26.0 NaHCO3) and coronal brain slices (300 um) were made using a vibratome (Leica). Slices were transferred onto a glass Petri dish with a transfer pipette and excess fluid was drained from the area surrounding the tissue. The Petri dish was placed on top of a chilled aluminum block and tissue was brought to a semi-frozen state before punches were taken.
Extracted molecule total RNA
Extraction protocol Stat-60 (Tel-Test) extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Starting with 10 ng of total RNA, cRNA targets were generated using the two-cycle target labeling method.
 
Hybridization protocol Labeled cRNA was purified, and 20 ?g of cRNA was fragmented to a range of 35 to 200 bases in length. Samples were hybridized at 450C for 16 h to Affymetrix mouse430_2 chips GeneChips were washed and stained in the Affymetrix Fluidic
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
Description Gene expression data from dorsal striatum of mouse
Data processing The data were analyzed with dChip softwareusing invariant-set normalization method.
 
Submission date Sep 05, 2006
Last update date Aug 28, 2018
Contact name Yong Huang
E-mail(s) yh9fj@virginia.edu
Phone (434) 243-0842
Organization name University of Viginia
Department Medicine
Street address 1340 Jefferson Park Ave
City Charlottesville
State/province VA
ZIP/Postal code 22908
Country USA
 
Platform ID GPL1261
Series (1)
GSE5763 Expression data from mouse brain region bed nucleus of the stria terminalis, nucleus accumbens, and dorsal striatum.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE dChip PM/MM model calculated expression values
ABS_CALL calculated by GCOS v4.0 software; the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1415670_at 463.436 P
1415671_at 865.353 P
1415672_at 1479.06 P
1415673_at 216.422 P
1415674_a_at 387.404 P
1415675_at 392.453 P
1415676_a_at 1428.1 P
1415677_at 199.3 P
1415678_at 1233.96 P
1415679_at 1237.72 P
1415680_at 283.738 P
1415681_at 392.158 P
1415682_at 298.27 P
1415683_at 909.64 P
1415684_at 114.77 P
1415685_at 141.417 P
1415686_at 513.828 P
1415687_a_at 3575.86 P
1415688_at 896.186 P
1415689_s_at 214.913 P

Total number of rows: 45037

Table truncated, full table size 936 Kbytes.




Supplementary file Size Download File type/resource
GSM134720.CEL.gz 3.7 Mb (ftp)(http) CEL

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