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Sample GSM135026 Query DataSets for GSM135026
Status Public on Jul 01, 2007
Title Sepsis Patient (sample TM8)
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Sepsis Patient
Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (Ambion)
Label Cy5
Label protocol SuperScriptâ„¢ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Label Cy3
Label protocol SuperScriptâ„¢ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptâ„¢ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software(Axon Instruments)
Description This sample is included in the training set
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have (1). at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Sep 07, 2006
Last update date Jun 15, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE5772 Leukocytes from patients with sepsis

Data table header descriptions
ID_REF
VALUE Log (Cy5/Cy3)

Data table
ID_REF VALUE
AB000464 -0.350660712
AB000509 -0.878032744
AB000520 -0.450457186
AB000895 -0.323476017
AB001328 -0.141145661
AB001451 -0.037721775
AB002282 -1.814268231
AB002293 -0.930876911
AB002296 0.085428618
AB002297 0.064844653
AB002298 0.194763035
AB002299 -0.797691941
AB002301 -0.31872803
AB002304 -0.521482587
AB002306 1.171145678
AB002308 0.822806001
AB002313 -0.966574013
AB002314 -0.453230441
AB002316 -0.660859704
AB002318 -0.522985518

Total number of rows: 18664

Table truncated, full table size 393 Kbytes.




Supplementary file Size Download File type/resource
GSM135026.gpr.gz 2.1 Mb (ftp)(http) GPR
Processed data included within Sample table

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