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Sample GSM135042 Query DataSets for GSM135042
Status Public on Jul 01, 2007
Title Sepsis Patient (sample TN4)
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Sepsis Patient
Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (Ambion)
Label Cy5
Label protocol SuperScriptâ„¢ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Label Cy3
Label protocol SuperScriptâ„¢ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptâ„¢ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software(Axon Instruments)
Description This sample is included in the training set
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have (1). at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Sep 07, 2006
Last update date Jun 15, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) benjamin@clubsalsa.com.au
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE5772 Leukocytes from patients with sepsis

Data table header descriptions
ID_REF
VALUE Log (Cy5/Cy3)

Data table
ID_REF VALUE
AB000464 0.401007265
AB000509 0.749213099
AB000520 1.344500065
AB000895 1.111770153
AB001328 -0.258979768
AB001451 -0.380953997
AB002282 -1.328701973
AB002293 -0.249329045
AB002296 0.575617373
AB002297 NULL
AB002298 0.268744618
AB002299 -0.037192266
AB002301 -0.142078549
AB002304 0.006514366
AB002306 -0.729367077
AB002308 0.123617373
AB002313 -0.175606877
AB002314 -0.145522371
AB002316 -0.337156177
AB002318 -0.27015239

Total number of rows: 18664

Table truncated, full table size 378 Kbytes.




Supplementary file Size Download File type/resource
GSM135042.gpr.gz 2.1 Mb (ftp)(http) GPR
Processed data included within Sample table

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