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Sample GSM135758 Query DataSets for GSM135758
Status Public on Nov 19, 2010
Title 66 mt E11.5 heart
Sample type RNA
 
Source name skNAC knockout heart
Organism Mus musculus
Characteristics strain: 129SvEv
developmental stage: E11.5
tissue: ventricle
Extracted molecule total RNA
Extraction protocol Trizol
Label Biotin
Label protocol 500ng of total RNA was amplified by using MessageAmpTM-Biotin Enhanced Kit from Ambion
 
Hybridization protocol Generic Affymetrix Eukaryotic Array
Scan protocol Generic Affymetrix Eukaryotic Array
Description Targeted deletion of skNAC in mice rsulted in embryonic lethality with cardiac defects by E12.5. In order to investigate the molecular mechanism of the cardiac defect, we compared gene expression profiles of the knockout heart and wild type heart.
Data processing GCOS (MAS5)
 
Submission date Sep 11, 2006
Last update date Nov 19, 2010
Contact name Chong Yon Park
E-mail(s) cpark@gladstone.ucsf.edu
Phone 415-734-2806
Organization name Gladstone Institute
Department Cardiovascular Diseases
Lab Deepak Srivastava
Street address 1650 Owens St.
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL1261
Series (1)
GSE5841 Differential gene expression in mouse skNAC knockout heart at E11.5

Data table header descriptions
ID_REF
VALUE skNAC knockout mouse ventricle - sample 66
ABS_CALL skNAC knockout mouse ventricle - sample 66

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 201.7 P
AFFX-BioB-M_at 249.9 P
AFFX-BioB-3_at 124.6 P
AFFX-BioC-5_at 337.2 P
AFFX-BioC-3_at 279.2 P
AFFX-BioDn-5_at 440 P
AFFX-BioDn-3_at 2320.5 P
AFFX-CreX-5_at 3183.5 P
AFFX-CreX-3_at 5249.5 P
AFFX-DapX-5_at 51.6 A
AFFX-DapX-M_at 9.2 A
AFFX-DapX-3_at 6 A
AFFX-LysX-5_at 28.5 A
AFFX-LysX-M_at 3.8 A
AFFX-LysX-3_at 7.4 A
AFFX-PheX-5_at 4.8 A
AFFX-PheX-M_at 2.7 A
AFFX-PheX-3_at 70.4 A
AFFX-ThrX-5_at 42.5 A
AFFX-ThrX-M_at 16.4 A

Total number of rows: 45101

Table truncated, full table size 825 Kbytes.




Supplementary file Size Download File type/resource
GSM135758.CEL.gz 6.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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