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Sample GSM1360896 Query DataSets for GSM1360896
Status Public on Jun 10, 2015
Title spleen_Cip2a_rep3
Sample type RNA
 
Source name spleen
Organism Mus musculus
Characteristics strain: C57BL/6Jx 129Ola
genotype/variation: mutant
age: 18 weeks
gender: male
mouse id: 30171100
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 7
replicate 3
Data processing The data were normalized using cubic spline normalization with Illumina Genomestudio 2011.1
 
Submission date Apr 01, 2014
Last update date Jun 10, 2015
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE56401 Cancerous inhibitor of Protein Phosphatase 2A is a novel cell-autonomous regulator governing both T-and B-cell activation in vivo

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1072.542 0
ILMN_2721178 229.4395 0
ILMN_3033922 197.7479 0
ILMN_3092673 1413.812 0
ILMN_2816356 7.672535 0.1002506
ILMN_2808939 344.0735 0
ILMN_2634564 279.5433 0
ILMN_2737647 5.461243 0.1616541
ILMN_2734484 41.23866 0.001253133
ILMN_2952292 38.42274 0.001253133
ILMN_2699078 -1.753055 0.556391
ILMN_1213681 71.72314 0
ILMN_2735413 -1.097581 0.5100251
ILMN_2735415 2.818338 0.2556391
ILMN_2891688 347.6084 0
ILMN_2637698 618.4188 0
ILMN_2674228 201.8453 0
ILMN_2601546 7.679307 0.0989975
ILMN_1230831 -0.2406678 0.4423559
ILMN_2848071 8.06688 0.09022556

Total number of rows: 25697

Table truncated, full table size 757 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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