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Sample GSM1360897 Query DataSets for GSM1360897
Status Public on Jun 10, 2015
Title spleen_Cip2a_rep4
Sample type RNA
 
Source name spleen
Organism Mus musculus
Characteristics strain: C57BL/6Jx 129Ola
genotype/variation: mutant
age: 18 weeks
gender: male
mouse id: 30171102
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 8
replicate 4
Data processing The data were normalized using cubic spline normalization with Illumina Genomestudio 2011.1
 
Submission date Apr 01, 2014
Last update date Jun 10, 2015
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE56401 Cancerous inhibitor of Protein Phosphatase 2A is a novel cell-autonomous regulator governing both T-and B-cell activation in vivo

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1044.837 0
ILMN_2721178 220.3063 0
ILMN_3033922 174.9073 0
ILMN_3092673 1563.33 0
ILMN_2816356 4.575128 0.197995
ILMN_2808939 386.4113 0
ILMN_2634564 277.3982 0
ILMN_2737647 3.465863 0.2343358
ILMN_2734484 54.20608 0.001253133
ILMN_2952292 50.96767 0.001253133
ILMN_2699078 -3.723005 0.7180451
ILMN_1213681 73.20632 0.001253133
ILMN_2735413 2.70786 0.2719298
ILMN_2735415 12.06577 0.05639098
ILMN_2891688 341.9395 0
ILMN_2637698 601.6893 0
ILMN_2674228 177.0726 0
ILMN_2601546 7.919547 0.1102757
ILMN_1230831 1.395761 0.3483709
ILMN_2848071 3.105058 0.2568922

Total number of rows: 25697

Table truncated, full table size 769 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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