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Sample GSM1360933 Query DataSets for GSM1360933
Status Public on Mar 23, 2015
Title MEF+KOSM_4d_2
Sample type RNA
 
Source name iPSC intermediate
Organism Mus musculus
Characteristics vector infection: Day 4
shield1 addition: none
Extracted molecule total RNA
Extraction protocol Total RNA was purified by ReliaPrep RNA Cell Miniprep System (Promega).
Label Biotin
Label protocol cRNA was prepared by reverse-transcription and labeling using Illumina TotalPrep RNA Amplification Kit (Life Technologies).
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing The data was normalized using GenomeStudio Gene Expression Module v1.0 and the report was created using GEO Data Submission Report Plug-in v2.0.0
 
Submission date Apr 01, 2014
Last update date Mar 23, 2015
Contact name Ken Nishimura
E-mail(s) ken-nishimura@md.tsukuba.ac.jp
Organization name University of Tsukuba
Street address 1-1-1 Tennodai
City Tsukuba, Ibaraki
ZIP/Postal code 305-8575
Country Japan
 
Platform ID GPL6885
Series (1)
GSE56406 Global gene expression analyses of paused iPSCs

Data table header descriptions
ID_REF
VALUE Average normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 6516.66 0
ILMN_2721178 2076.041 0.003759399
ILMN_3033922 2397.766 0.001253133
ILMN_3092673 8685.088 0
ILMN_2816356 58.72234 0.1691729
ILMN_2808939 1272.481 0.01503759
ILMN_2634564 176.8838 0.1190476
ILMN_2737647 -87.68497 0.5325814
ILMN_2734484 -97.35996 0.5802005
ILMN_2952292 -140.495 0.8082707
ILMN_2699078 -72.27829 0.4511278
ILMN_1213681 401.9975 0.05889724
ILMN_2735413 42.21973 0.1867168
ILMN_2735415 -63.01466 0.4160401
ILMN_2891688 454.0508 0.05137845
ILMN_2637698 961.9266 0.02255639
ILMN_2674228 710.307 0.02756892
ILMN_2601546 21.07484 0.197995
ILMN_1230831 -43.42501 0.3521303
ILMN_2848071 154.5327 0.1265664

Total number of rows: 25697

Table truncated, full table size 804 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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